I've seen images of regular cheesecake (crust + filling) baked in muffin tins,
Will basque burnt cheesecake be as creamy as the original in muffin/cupcake pan?
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I expect that you will need to change the baking temperature or (mostly) the cooking time.
The smaller muffin pans have a large surface area so the heat will penetrate quicker and cook your cheesecake quicker.
I suggest you experiment, check to see if there are cheesecake recipes that use muffin pans to have an idea about cooking time and temperature.